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One or more keywords matched the following properties of Basu, Anindita
PropertyValue
keywords Single Cell Analysis
keywords Single Nucleus Analysis
overview We are an interdisciplinary research group that combines expertise from physics, genomics, molecular biology and materials science to study complex biological systems with single cell resolution, at very high throughput, and in context of their native environments. We are jointly affiliated with the department of Medicine at UChicago and Center for Nanoscale Systems at ANL. We develop and apply key technologies that allow single-cell epi-genomic and transcriptomic profiling of as many as 104-105 cells, including mammalian and microbial cells such as bacteria and yeasts, using microfluidics and next-gen sequencing, with applications in basic and translational research. We also develop tools to study inter-cellular interactions in complex biological systems in context of environment, as well as physical and chemical techniques to systematically perturb them. We expect our work will help create better taxonomy of cells in complex tissues, relate epi-genomics to transcription at a single cell level, and decipher inter-cellular interactions in healthy and diseased systems. This will help us understand systems-level cellular organization and function as part of complex biological environments.
One or more keywords matched the following items that are connected to Basu, Anindita
Item TypeName
Concept Cell Differentiation
Concept Cell Nucleus
Concept 3T3 Cells
Concept Single-Cell Analysis
Concept HEK293 Cells
Concept Cell Lineage
Concept Cell Line, Tumor
Concept Cell Line
Concept DNA, Single-Stranded
Concept Genomics
Academic Article Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Academic Article Massively parallel single-nucleus RNA-seq with DroNc-seq.
Academic Article Rapid, targeted and culture-free viral infectivity assay in drop-based microfluidics.
Academic Article High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics.
Academic Article Mechanochemical regulations of RPA's binding to ssDNA.
Academic Article Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation.
Academic Article Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation.
Academic Article Fixed single-cell RNA sequencing for understanding virus infection and host response.
Academic Article Characterizing the tumor microenvironment of metastatic ovarian cancer by single-cell transcriptomics.
Academic Article High-throughput RNA sequencing of paraformaldehyde-fixed single cells.
Academic Article mDrop-Seq: Massively Parallel Single-Cell RNA-Seq of Saccharomyces cerevisiae and Candida albicans.
Academic Article Hedgehog signaling activates a mammalian heterochronic gene regulatory network controlling differentiation timing across lineages.
Academic Article A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing.
Concept A549 Cells
Academic Article Integration of silicon chip microstructures for in-line microbial cell lysis in soft microfluidics.
Academic Article Ribonucleotide reductase regulatory subunit M2 drives glioblastoma TMZ resistance through modulation of dNTP production.
Academic Article Single-cell genomics improves the discovery of risk variants and genes of atrial fibrillation.
Academic Article Exploring the tumor micro-environment in primary and metastatic tumors of different ovarian cancer histotypes.
Search Criteria
  • Single
  • Cell
  • Genomics